ECOL 453R/553R
Computing Concepts for Bioinformatics
Fall 2003
Class Notes (HTML/Powerpoint) This is for ECOL 453/553R ONLY!!!

Part I: Introduction to Bioinformatics

Part II: Introduction to UNIX & PERL

Part III: Introduction to commandline, EMBOSS

Part IV: Your first perl program

Part V: Your second perl program

Part VI: Your first Bioperl program

Part VII: NCBI BLAST

Part VIII: Comamnd line Interactions, GetOpt and SeqIO

Part IX: EMBOSS and Clustal

Part X: Database concepts and MySQL

Part XI: More MySQL and Perl DBI/DBD

Part XII: Introduction to R and more Perl+MySQL

Part XIII: Perl Patterns & Subroutines, Sequence Features and BioPerl SearchIO

Part XIV: Access, Excel, PHP and MySQL !!!

Final Project:

  • Specifications
  • Overview
  • Steps and Hints
  • Download  PowerPoint SlideShow: Part I Part II Part III Part IV Part V Part VI Part VIIPart VIII Part IX Part X Part XI Part XII Part XIII Part XIV